rs13469062 SNP Detail

Summary

• ID
  rs13469062
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:117704808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCATCCA GCTGTGTGCC
  CAGCTCCTTG TTGCTTTTAG TAACCCCGAT CCCCTTCTCA GAGAGCCAGA AGCAGGTGCC
  TGTTAGTGCT ACCATGTTTT TGACCCATGC TAGTTTCTCC ACTGGGAGCC CCAACTCTTT
  CCCCAAAGCC AAGCTTGGGG ATCCTCGTGC CTGTCTCCCC ACGTCCTCAC TCAGGTTCAG
  K
  AGCCAGCTCT CTGCTGTGTC TTCTGGGGTC ACCACTGTGC CAATTGTCCC CAGGCTGCCT
  GCCAACCGTG GGACAGGCAG AGGGACAAGA TGCCACTTCC TTCTTTCTCC CGCTCCTGGC
  AGGAGGGACA GGATTTGCCT GGAGATAACA CCCAGCTTTA TGTAAATACT ACCAAGCAGC
  GGTTAGATAC TAGTGGGGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss37243945	NES08505565	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	T	G	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs13469062					SNP	G	G	G	T	G	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37243945	NES08505565	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:117704808 () rs orientation: forward

Symbol	Name	Function Class
Gm20708	predicted gene 20708	within coordinates
Rr460820	regulatory region 460820	1971 bp distal
Rr460821	regulatory region 460821	within coordinates
Rr460822	regulatory region 460822	907 bp proximal
Syngr2	synaptogyrin 2	within coordinates
Tk1	thymidine kinase 1	1544 bp downstream
Tssr106080	transcription start site region 106080	679 bp downstream
Tssr106081	transcription start site region 106081	561 bp downstream
Tssr106082	transcription start site region 106082	518 bp downstream
Tssr106083	transcription start site region 106083	303 bp downstream
Tssr106084	transcription start site region 106084	246 bp downstream
Tssr106085	transcription start site region 106085	216 bp downstream
Tssr106086	transcription start site region 106086	147 bp downstream
Tssr112040	transcription start site region 112040	545 bp upstream
Tssr112041	transcription start site region 112041	516 bp upstream
Tssr112042	transcription start site region 112042	487 bp upstream
Tssr112043	transcription start site region 112043	212 bp upstream