rs13469211 SNP Detail

Summary

• ID
  rs13469211
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113877879 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTGTG CTTCTTGGAA TCCTCTGAGC
  C
  CCCTCCCCAT CTCTCATCAG TCATT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147245756	ENSMUSSNP5575418	ENSEMBL	ENSEMBL_Sanger	r	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs13469211					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113877879 () rs orientation: reverse

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Rr562815	regulatory region 562815	1688 bp distal
Rr562816	regulatory region 562816	within coordinates
Tssr600	transcription start site region 600	164 bp downstream
Tssr601	transcription start site region 601	174 bp downstream
Tssr19429	transcription start site region 19429	101 bp downstream
Tssr19430	transcription start site region 19430	within coordinates
Tssr19431	transcription start site region 19431	61 bp upstream
Tssr19432	transcription start site region 19432	157 bp upstream
Tssr19433	transcription start site region 19433	723 bp upstream
Tssr19434	transcription start site region 19434	776 bp upstream
Tssr19435	transcription start site region 19435	1771 bp upstream
Tssr25660	transcription start site region 25660	80 bp upstream
Tssr25661	transcription start site region 25661	59 bp upstream
Tssr25662	transcription start site region 25662	within coordinates
Tssr25663	transcription start site region 25663	50 bp downstream
Tssr25664	transcription start site region 25664	80 bp downstream
Tssr25665	transcription start site region 25665	188 bp downstream
Tssr25666	transcription start site region 25666	755 bp downstream
Tssr25667	transcription start site region 25667	782 bp downstream
Tssr25668	transcription start site region 25668	818 bp downstream
Tssr25669	transcription start site region 25669	847 bp downstream
Tssr25670	transcription start site region 25670	1803 bp downstream
Tssr25671	transcription start site region 25671	1846 bp downstream
Tssr25672	transcription start site region 25672	1915 bp downstream
Tssr25673	transcription start site region 25673	1950 bp downstream