rs13469564 SNP Detail

Summary

• ID
  rs13469564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84823768 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGCCA GTGGTTCCAG CCTCCCTCAC
  Y
  TGGGGGGTGG GGGGAGCCCC GTGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46176044	mCV23392733	ABI	CRAMUS_MOUSE	r	SNP	G	G	A	G
ss145371905	ENSMUSSNP3770688	ENSEMBL	ENSEMBL_Sanger	r	SNP		G		G
ss322747568	CHEV_8_86621038	CHEVERUD	SCREENING_POP	r	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs13469564					SNP	C	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84823768 () rs orientation: reverse

Symbol	Name	Function Class
Dcaf15	DDB1 and CUL4 associated factor 15	within coordinates
Gm39210	predicted gene, 39210	901 bp upstream
Rfx1	regulatory factor X, 1 (influences HLA class II expression)	147 bp downstream