rs13469855 SNP Detail

Summary

• ID
  rs13469855
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90396738 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTCCA ACGGCTTTGT CTGGTAGACA
  S
  GAGAAGATTC CAGGAAAGTC TCTGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60424449	NES15924383	PERLEGEN	MM_PANEL2	r	SNP	G	G	G	G	G	C		G	C	G	G		C
ss320837896	CHEV_3_90293353	CHEVERUD	SCREENING_POP	r	SNP							G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs13469855					SNP	C	C	C	C	C	G	C	C	G	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424449	NES15924383	PERLEGEN	MM_PANEL	r	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90396738 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13464	CpG island 13464	1321 bp proximal
Ilf2	interleukin enhancer binding factor 2	1052 bp downstream
Rr397812	regulatory region 397812	1567 bp upstream
Rr580375	regulatory region 580375	1592 bp proximal
Rr580376	regulatory region 580376	1607 bp proximal
Rr580377	regulatory region 580377	1719 bp proximal
Snapin	SNAP-associated protein	mRNA-UTR
Tssr944	transcription start site region 944	1494 bp downstream
Tssr34231	transcription start site region 34231	274 bp upstream
Tssr34232	transcription start site region 34232	1286 bp downstream
Tssr34233	transcription start site region 34233	1351 bp downstream
Tssr34234	transcription start site region 34234	1544 bp downstream