rs13469917 SNP Detail

Summary

• ID
  rs13469917
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115518906 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGAAC TGAGCTTGAG GAGCCCGGAC
  C
  GGCCTGAAGT GTCAGGTGAG TGGAC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss132877520	ENSMUSSNP5997844	ENSEMBL	ENSEMBL_Sanger	r	SNP	G
ss323863457	CHEV_11_115489394	CHEVERUD	SCREENING_POP	r	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs13469917					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115518906 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi4144	CpG island 4144	within coordinates
Gm74427	predicted gene, 74427	335 bp upstream
Rr246115	regulatory region 246115	within coordinates
Rr369445	regulatory region 369445	within coordinates
Slc25a19	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	within coordinates
Tssr105892	transcription start site region 105892	324 bp upstream
Tssr111780	transcription start site region 111780	371 bp upstream
Tssr111781	transcription start site region 111781	342 bp upstream
Tssr111782	transcription start site region 111782	321 bp upstream
Tssr111783	transcription start site region 111783	289 bp upstream
Tssr111784	transcription start site region 111784	13 bp downstream
Tssr111785	transcription start site region 111785	45 bp downstream
Tssr111786	transcription start site region 111786	153 bp downstream
Tssr111787	transcription start site region 111787	180 bp downstream