rs13469976 SNP Detail

Summary

• ID
  rs13469976
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116848914 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGTCC CACGCAGGAC ATCTTGGCAC
  Y
  GAGCTCTTCA GCAAGTTTGC ACTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45597992	mCV24651372	ABI	CRAMUS_MOUSE	r	SNP	G	A	G	A
ss147282986	ENSMUSSNP1582294	ENSEMBL	ENSEMBL_Sanger	r	SNP	G	A		A
ss321278614	CHEV_4_116664322	CHEVERUD	SCREENING_POP	r	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs13469976					SNP	C	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116848914 () rs orientation: reverse

Symbol	Name	Function Class
Rr598013	regulatory region 598013	152 bp distal
Tssr42934	transcription start site region 42934	1520 bp upstream
Tssr42935	transcription start site region 42935	1336 bp upstream
Tssr42936	transcription start site region 42936	844 bp downstream
Tssr42937	transcription start site region 42937	1907 bp downstream
Tssr42938	transcription start site region 42938	1970 bp downstream
Urod	uroporphyrinogen decarboxylase	within coordinates