rs13470060 SNP Detail

Summary

• ID
  rs13470060
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134944030 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AAAAG TCGCCTGCGA CATCAGTGGA
  Y
  CCCATGTTGC TGTGTGCATG GTATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37780926	NES09153925	PERLEGEN	MM_PANEL2	r	SNP	G	G	G	G	G	G	G	G	A	G		G	G	G	G		A
ss321351206	CHEV_4_134772634	CHEVERUD	SCREENING_POP	r	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs13470060					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37780926	NES09153925	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134944030 () rs orientation: reverse

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	within coordinates
Tssr43955	transcription start site region 43955	323 bp upstream
Tssr43956	transcription start site region 43956	292 bp upstream
Tssr43957	transcription start site region 43957	42 bp upstream
Tssr43958	transcription start site region 43958	74 bp downstream
Tssr43959	transcription start site region 43959	103 bp downstream
Tssr43960	transcription start site region 43960	256 bp downstream
Tssr43961	transcription start site region 43961	310 bp downstream
Tssr43962	transcription start site region 43962	341 bp downstream
Tssr43963	transcription start site region 43963	416 bp downstream
Tssr43964	transcription start site region 43964	535 bp downstream
Tssr43965	transcription start site region 43965	1893 bp downstream