rs13470098 SNP Detail

Summary

• ID
  rs13470098
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134654865 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                   tcaaaagcat aaactaccat tcacaactAA
  TGCTGTCTTT TAAAGGTCAG TCttttattt atgtgtatca agtttgccca catgtgagtc
  acacatccca tggaacagaa cgctgggtcc cctagaattg gagttacaga tgattaagag
  R
  AGTCTTAGGG CATATTCCAA TACCAGCCCT GAGGGGATAC ACATTTAAAG AAAAAAGAAA
  CCAATGTCCA ACCTCCCTAA TGCAACACAC AAATGTCAAA GTATGAATTC ATAAACCCTG
  TGTTGTTTTC AGGAAGGTTT CTTCTTCAG                                  
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321350004	CHEV_4_134483469	CHEVERUD	SCREENING_POP	r	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs13470098					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134654865 () rs orientation: reverse

Symbol	Name	Function Class
Rsrp1	arginine/serine rich protein 1	184 bp downstream
Tssr39592	transcription start site region 39592	1481 bp downstream
Tssr39593	transcription start site region 39593	951 bp downstream
Tssr39594	transcription start site region 39594	864 bp downstream
Tssr39595	transcription start site region 39595	824 bp downstream
Tssr43947	transcription start site region 43947	183 bp upstream