rs13470100 SNP Detail

Summary

• ID
  rs13470100
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134654070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             ATGTTTAAAA TTCTCTTCCT CTTTAGCATT CAGAAAAGCA GACTGAAGAT
  R
  CAACTAAAAA TACCAGTGAA AAGTCTTCTA CACAAAGAAA CATAGCCTTC           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BR/cdJ	CAST/EiJ	CE/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	SEA/GnJ	SEG/Pas	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss16375691	04.132.987	TWGNF	TWGNF-Mouse-2	f	SNP							G		A			A		A		A		A	A	A		A	A		G
ss37759586	NES09162156	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	A		A		G	G	A		A	G		G							G
ss147538861	ENSMUSSNP3895020	ENSEMBL	ENSEMBL_Sanger	f	SNP		G								G
ss321350003	CHEV_4_134482674	CHEVERUD	SCREENING_POP	f	SNP													A								A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BR/cdJ	CAST/EiJ	CE/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	SEA/GnJ	SEG/Pas	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs13470100					SNP	G	G	A	A	G	A	G	A	A	G	G	A	A	A	G	A	G	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37759586	NES09162156	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134654070 () rs orientation: forward

Symbol	Name	Function Class
Rr601869	regulatory region 601869	477 bp distal
Rr601870	regulatory region 601870	1470 bp proximal
Rsrp1	arginine/serine rich protein 1	within coordinates
Tssr39591	transcription start site region 39591	1292 bp downstream
Tssr39592	transcription start site region 39592	686 bp downstream
Tssr39593	transcription start site region 39593	156 bp downstream
Tssr39594	transcription start site region 39594	69 bp downstream
Tssr39595	transcription start site region 39595	29 bp downstream
Tssr43947	transcription start site region 43947	609 bp downstream