rs13470103 SNP Detail

Summary

• ID
  rs13470103
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134653393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAAGGCAGT GACAGCTCAG CAGCCTAGAG
  GCACTGTCAT GGTGGGCATC TGTGATCTAG ACGTCCTTCA CATGATATAT GCAATATATT
  CCAGATGTTT TGAGAGATTA CAGAAGAAGA GGCCTGCTTC CCTTGCAGAT AAGTTTATTA
  Y
  GATTCTCCAG AACTACAGAG GGTGTGCATT GGCACACTGC AGTATATAAG TTAAACCTGG
  ATCTTAAGGT TAATAATTTg ggctgggatg taactcagtt gtagagaact ttgtcagggt
  gcatagtacc tggggttagc tcccagcact                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321350000	CHEV_4_134481997	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs13470103					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134653393 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15053	CpG island 15053	1418 bp distal
Rr601868	regulatory region 601868	1711 bp distal
Rr601869	regulatory region 601869	within coordinates
Rsrp1	arginine/serine rich protein 1	within coordinates
Tssr39585	transcription start site region 39585	1983 bp downstream
Tssr39586	transcription start site region 39586	1861 bp downstream
Tssr39587	transcription start site region 39587	1793 bp downstream
Tssr39588	transcription start site region 39588	1707 bp downstream
Tssr39589	transcription start site region 39589	1682 bp downstream
Tssr39590	transcription start site region 39590	1655 bp downstream
Tssr39591	transcription start site region 39591	615 bp downstream
Tssr39592	transcription start site region 39592	9 bp downstream
Tssr39593	transcription start site region 39593	508 bp upstream
Tssr39594	transcription start site region 39594	593 bp upstream
Tssr39595	transcription start site region 39595	620 bp upstream
Tssr43947	transcription start site region 43947	1286 bp downstream