rs13470169 SNP Detail

Summary

• ID
  rs13470169
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121281758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTCC TCTAAGAACT ATAGAGACTT
  Y
  TTTTCTGTGA TTTTTATCCC CCACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45258487	mCV22586524	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss147386390	ENSMUSSNP4356215	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss320483217	CHEV_2_121277013	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs13470169					SNP	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121281758 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12159	CpG island 12159	951 bp distal
Gm22953	predicted gene, 22953	507 bp upstream
Gm75262	predicted gene, 75262	1069 bp upstream
Rr55495	regulatory region 55495	within coordinates
Rr55496	regulatory region 55496	242 bp proximal
Rr397250	regulatory region 397250	1861 bp downstream
Serf2	small EDRK-rich factor 2	within coordinates
Serinc4	serine incorporator 4	within coordinates
Tssr19771	transcription start site region 19771	1884 bp downstream
Tssr19772	transcription start site region 19772	964 bp downstream
Tssr25936	transcription start site region 25936	1064 bp upstream