rs13470289 SNP Detail

Summary

• ID
  rs13470289
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:40965070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCA CCCCGTCCGG GCCGTGCTCG
  R
  TCGCCCGGGA AGCACTGGGC TAAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46254103	mCV24410006	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss144660308	ENSMUSSNP448962	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss322631354	CHEV_8_41597383	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs13470289					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40965070 () rs orientation: forward

Symbol	Name	Function Class
Cnot7	CCR4-NOT transcription complex, subunit 7	within coordinates
Cpgi20281	CpG island 20281	within coordinates
Rr662586	regulatory region 662586	736 bp distal
Rr662587	regulatory region 662587	151 bp distal
Tssr2553	transcription start site region 2553	800 bp upstream
Tssr2554	transcription start site region 2554	541 bp downstream
Tssr76955	transcription start site region 76955	585 bp downstream
Tssr76956	transcription start site region 76956	242 bp downstream
Tssr76957	transcription start site region 76957	167 bp downstream
Tssr81046	transcription start site region 81046	1549 bp upstream
Tssr81047	transcription start site region 81047	755 bp upstream
Tssr81048	transcription start site region 81048	732 bp upstream
Tssr81049	transcription start site region 81049	683 bp upstream
Tssr81050	transcription start site region 81050	273 bp upstream
Vps37a	vacuolar protein sorting 37A	within coordinates