rs13470397 SNP Detail

Summary

• ID
  rs13470397
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69580764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTT AATTCCTTCC TGTCTCAAAT
  Y
  TTCAGTTTTT AAGACTTACT GTTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38129541	NES09282267	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C	C	T	C	C	T	T
ss45354225	mCV25080784	ABI	CRAMUS_MOUSE	f	SNP		C	C					T
ss146730185	ENSMUSSNP590358	ENSEMBL	ENSEMBL_Sanger	f	SNP			C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs13470397					SNP	T	C	C	C	C	C	C	T	?	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38129541	NES09282267	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69580764 () rs orientation: forward

Symbol	Name	Function Class
Ppig	peptidyl-prolyl isomerase G (cyclophilin G)	within coordinates
Tssr18139	transcription start site region 18139	1450 bp downstream
Tssr18140	transcription start site region 18140	1421 bp downstream
Tssr18141	transcription start site region 18141	1402 bp downstream
Tssr18142	transcription start site region 18142	1383 bp downstream
Tssr18143	transcription start site region 18143	1343 bp downstream
Tssr18144	transcription start site region 18144	1147 bp downstream
Tssr18145	transcription start site region 18145	1016 bp downstream
Tssr18146	transcription start site region 18146	926 bp downstream
Tssr18147	transcription start site region 18147	870 bp downstream
Tssr18148	transcription start site region 18148	834 bp downstream
Tssr18149	transcription start site region 18149	815 bp downstream
Tssr18150	transcription start site region 18150	770 bp downstream
Tssr18151	transcription start site region 18151	747 bp downstream
Tssr18152	transcription start site region 18152	678 bp downstream
Tssr18153	transcription start site region 18153	596 bp downstream
Tssr18154	transcription start site region 18154	490 bp downstream
Tssr18155	transcription start site region 18155	469 bp downstream
Tssr18156	transcription start site region 18156	418 bp downstream
Tssr18157	transcription start site region 18157	93 bp upstream