rs13470404 SNP Detail

Summary

• ID
  rs13470404
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:178164963 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CCGCC ATGGAGCCCG GGAACGGCAG
  Y
  CTCGACCTAG GTGGCGATGC GGCCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45019889	mCV22831349	ABI	CRAMUS_MOUSE	r	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs13470404					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:178164963 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi1090	CpG island 1090	within coordinates
Hnrnpu	heterogeneous nuclear ribonucleoprotein U	within coordinates
Rr29068	regulatory region 29068	within coordinates
Rr372516	regulatory region 372516	within coordinates
Tssr316	transcription start site region 316	311 bp upstream
Tssr317	transcription start site region 317	189 bp downstream
Tssr318	transcription start site region 318	406 bp downstream
Tssr10384	transcription start site region 10384	1475 bp downstream
Tssr10385	transcription start site region 10385	1261 bp downstream
Tssr10386	transcription start site region 10386	1184 bp downstream
Tssr10387	transcription start site region 10387	220 bp downstream
Tssr10388	transcription start site region 10388	82 bp downstream
Tssr10389	transcription start site region 10389	472 bp upstream
Tssr10390	transcription start site region 10390	573 bp upstream
Tssr10391	transcription start site region 10391	796 bp upstream
Tssr15481	transcription start site region 15481	1305 bp upstream
Tssr15482	transcription start site region 15482	1234 bp upstream
Tssr15483	transcription start site region 15483	990 bp upstream
Tssr15484	transcription start site region 15484	280 bp upstream
Tssr15485	transcription start site region 15485	226 bp upstream
Tssr15486	transcription start site region 15486	145 bp upstream
Tssr15487	transcription start site region 15487	79 bp upstream
Tssr15488	transcription start site region 15488	250 bp downstream
Tssr15489	transcription start site region 15489	275 bp downstream
Tssr15490	transcription start site region 15490	308 bp downstream
Tssr15491	transcription start site region 15491	342 bp downstream
Tssr15492	transcription start site region 15492	376 bp downstream