rs13470501 SNP Detail

Summary

• ID
  rs13470501
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108464393 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

             CCTGAGGAAG GATCCTTAGG AATGGCCAGA AAACAGCAAT CATTGCAATT
  W
  GCCTGTGGAC CAATTCCTAG CGAGCCTTAC ACATGCATCG TGTGCTTGGT           
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46866133	NES10725943	PERLEGEN	MM_PANEL2	r	SNP	T	T	T	T	T	T	A	T	T	T	A	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs13470501					SNP	A	A	A	A	A	A	T	A	A	A	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46866133	NES10725943	PERLEGEN	MM_PANEL	r	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108464393 () rs orientation: reverse

Symbol	Name	Function Class
Gm43435	predicted gene 43435	173 bp downstream
Rr583261	regulatory region 583261	1772 bp distal
Rr583263	regulatory region 583263	845 bp proximal
Rr583264	regulatory region 583264	1424 bp proximal
Tmem167b	transmembrane protein 167B	mRNA-UTR