rs13470502 SNP Detail

Summary

• ID
  rs13470502
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108466156 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

             TCAACTCTCC TACACTGGGT CCAGGTTTCC GACAAGTTCT TCATCTTTAT
  R
  CCTTGGTTGG CAGTTGATGA GTTGGAGGGT TTGGAATTCA TTTGATAAAC           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46866154	NES10725831	PERLEGEN	MM_PANEL2	r	SNP	C	C	C	C	C	C	C	C	C	T		C	T	T	C
ss135585617	ENSMUSSNP2905899	ENSEMBL	ENSEMBL_Sanger	r	SNP		C					C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs13470502					SNP	G	G	G	G	G	G	G	G	G	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46866154	NES10725831	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108466156 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm43435	predicted gene 43435			1936 bp downstream
Rr583263	regulatory region 583263			646 bp distal
Rr583264	regulatory region 583264			58 bp distal
Tmem167b	transmembrane protein 167B			Coding-Synonymous
				mRNA-UTR