rs13470535 SNP Detail

Summary

• ID
  rs13470535
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69541493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGTGCGCCT GCGCCGCGCT GCTGCGGGGC CAGTCGGGAC
  GGAGGAGACA AGATGGCGTT GCGAGCGATG CGGGGAATCG TGAACGGGGC CGCACCCGAA
  M
  TGCCCGTGCC CACCGGTGGG CCGATGGCCG GAGCTCGGGA GCAGGCGCTG GCGGTGAGCC
  GGAACTACCT ATCCCAGCCT CGTCTCAGTG AGTACGGGA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46265810	mCV22776451	ABI	CRAMUS_MOUSE	f	SNP		C	C		C		A
ss50565143	NES14071381	PERLEGEN	MM_PANEL2	f	SNP	C		C	C		C	A	C	C		C	C	C	C		C
ss145091535	ENSMUSSNP6967180	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C				A
ss322693715	CHEV_8_71612740	CHEVERUD	SCREENING_POP	f	SNP										C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs13470535					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50565143	NES14071381	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69541493 () rs orientation: forward

Symbol	Name	Function Class
Atp6v1b2	ATPase, H+ transporting, lysosomal V1 subunit B2	within coordinates
Cpgi20406	CpG island 20406	within coordinates
Rr400869	regulatory region 400869	54 bp downstream
Rr664484	regulatory region 664484	185 bp distal
Rr664485	regulatory region 664485	371 bp proximal
Slc18a1	solute carrier family 18 (vesicular monoamine), member 1	within coordinates
Tssr77656	transcription start site region 77656	114 bp downstream
Tssr77657	transcription start site region 77657	97 bp downstream
Tssr77658	transcription start site region 77658	45 bp downstream
Tssr81518	transcription start site region 81518	359 bp downstream