CACGG ACATGCCGGA GGAGTTCAAC W TGGGCACACA CGACTGTCAC AGACG W = A/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss39359811 | mCV25341269 | ABI | CRAMUS_MOUSE | f | SNP | A | A | T | A | A | ||||||||||
ss51593134 | NES14609195 | PERLEGEN | MM_PANEL2 | f | SNP | A | T | A | A | A | A | A | A | T | A | A | A | A | ||
ss147089609 | ENSMUSSNP5160523 | ENSEMBL | ENSEMBL_Sanger | f | SNP | A | T | A | ||||||||||||
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
WSB/EiJ |
||||
rs13470544 | SNP | A | A | T | A | A | A | A | A | A | A | T | A | A | A | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss51593134 | NES14609195 | PERLEGEN | MM_PANEL | f | SNP | A/T |
Location: Chr15:12826218 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
6030458C11Rik | RIKEN cDNA 6030458C11 gene | 1483 bp upstream | ||||||
Cpgi6961 | CpG island 6961 | 776 bp distal | ||||||
D15Mit199 | DNA segment, Chr 15, Massachusetts Institute of Technology 199 | 484 bp proximal | ||||||
Drosha | drosha, ribonuclease type III | within coordinates | ||||||
Rr311575 | regulatory region 311575 | within coordinates | ||||||
Rr369910 | regulatory region 369910 | 1227 bp downstream | ||||||
Rr369911 | regulatory region 369911 | 991 bp downstream | ||||||
Tssr130744 | transcription start site region 130744 | 1299 bp downstream | ||||||
Tssr130745 | transcription start site region 130745 | 1249 bp downstream | ||||||
Tssr130746 | transcription start site region 130746 | 1225 bp downstream | ||||||
Tssr133797 | transcription start site region 133797 | 1528 bp upstream | ||||||
Tssr133798 | transcription start site region 133798 | 1478 bp upstream | ||||||
Tssr133799 | transcription start site region 133799 | 1457 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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