rs13470762 SNP Detail

Summary

• ID
  rs13470762
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:98886950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCA TGGGCTCAGA GATGGAGCCA
  Y
  TGCTCCGGGC CTGGAGCTAT TTTAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss38977010	mCV24981749	ABI	CRAMUS_MOUSE	f	SNP		T	C			C
ss61685130	NES17645805	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T		C	T	T	C	T	C
ss137987698	ENSMUSSNP6540505	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs13470762					SNP	T	T	C	C	T	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61685130	NES17645805	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:98886950 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4974	CpG island 4974	within coordinates
Rr403444	regulatory region 403444	173 bp downstream
Rr470976	regulatory region 470976	69 bp distal
Rr470977	regulatory region 470977	260 bp distal
Rr470978	regulatory region 470978	1085 bp proximal
Tssr114655	transcription start site region 114655	138 bp downstream
Tssr114656	transcription start site region 114656	72 bp downstream
Tssr114657	transcription start site region 114657	57 bp downstream
Tssr114658	transcription start site region 114658	29 bp downstream
Ttc8	tetratricopeptide repeat domain 8	within coordinates