rs13471073 SNP Detail

Summary

• ID
  rs13471073
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:122068993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CACTCACGCA GCAGCAGCAG AACCACAGGC CCAGCGGAGA TCATTGTGCT
  Y
  ATTTCTGATG ACGAGGCTTC TGAAACGGAG TCCCACACTT CTGGGGTTAC           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45383406	mCV23980370	ABI	CRAMUS_MOUSE	f	SNP		T			T	C
ss51020936	NES13905106	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C		C	T		C	T	C		T
ss135737969	ENSMUSSNP3452139	ENSEMBL	ENSEMBL_Sanger	f	SNP		T				C
ss320909963	CHEV_3_121978262	CHEVERUD	SCREENING_POP	f	SNP								T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs13471073					SNP	C	T	T	C	T	C	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51020936	NES13905106	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122068993 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13766	CpG island 13766			476 bp distal
Dnttip2	deoxynucleotidyltransferase, terminal, interacting protein 2			Coding-Synonymous
				Noncoding-Transcript-Variant
Gm17494	predicted gene, 17494			within coordinates
Rr584273	regulatory region 584273			946 bp distal
Rr584274	regulatory region 584274			323 bp distal
Tssr31491	transcription start site region 31491			929 bp downstream
Tssr31492	transcription start site region 31492			209 bp upstream