rs13471103 SNP Detail

Summary

• ID
  rs13471103
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34996710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCGGCTG CCTCTTCACT
  CTCTTCTTAC CCATCCCCAG TGGCTACCTC CTACCCATCC CCTGCCACCA CCTCATTCCC
  ATCCCCTGTG CCCACTTCCT ACTCCTCTCC TGGCTCCTCC ACCTACCCAT CTCCTGCGCA
  CAGTGGCTTC CCGTCGCCGT CAGTGGCCAC CACCTTTGCC TCCGTTCCAC CTGCTTTCCC
  Y
  ACCCAGGTCA GCAGCTTCCC GTCTGCGGGC GTCAGCAGCT CCTTCAGCAC CTCAACTGGT
  CTTTCAGACA TGACAGCGAC CTTTTCTCCC AGGACAATTG AAATTTGCTA AAGGGAATAA
  AAGAAAGCAA AGGGAGAGGC AGGAAAGACA TAAAAGCACA GGAGGGAAGA GATGGCCGCA
  AGAGGGGCCA CCTCTTAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400248351	MGP_WTSI_18_35023311	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	T	T	T	C	C	C	C	C	C	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C	T	T	C	C	C	T	C	T	T	T	T	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13471103					SNP	C	C	C	C	C	C	C	C	C	T	T	T	C	C	C	C	C	C	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C	T	T	C	C	C	T	C	T	T	T	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400248351	MGP_WTSI_18_35023311	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34996710 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9830	CpG island 9830	857 bp distal
Egr1	early growth response 1	within coordinates
Rr535729	regulatory region 535729	1379 bp proximal
Tssr150489	transcription start site region 150489	1176 bp downstream
Tssr150490	transcription start site region 150490	1136 bp downstream
Tssr150491	transcription start site region 150491	1087 bp downstream
Tssr150492	transcription start site region 150492	1041 bp downstream
Tssr150493	transcription start site region 150493	959 bp downstream
Tssr150494	transcription start site region 150494	692 bp downstream
Tssr150495	transcription start site region 150495	638 bp downstream
Tssr150496	transcription start site region 150496	569 bp downstream
Tssr150497	transcription start site region 150497	398 bp downstream
Tssr150498	transcription start site region 150498	281 bp downstream
Tssr150499	transcription start site region 150499	152 bp downstream
Tssr150500	transcription start site region 150500	693 bp upstream
Tssr150501	transcription start site region 150501	998 bp upstream
Tssr152833	transcription start site region 152833	936 bp upstream
Tssr152834	transcription start site region 152834	843 bp upstream