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rs13471298 SNP Detail
Summary
  • ID
    rs13471298
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr15:76133977 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGCGACAGGG CTGCATTTCT
GTGCCACCTT CTGTCCACTC ACTGTTGCAT GAGCCCTGTC TGCCAGCCCC ATCCCAGGGT
CAGGGACCAA CACCAGGTCT CAGGGGAGAA GGATCATACC AAGAGGTGAG GGTGCACGTC
TTCCCTTCTG TCCCGGCTCC CCTGGCATAG AGTACCCGTG TCCCCTCCCC ACCCTGCCTT
Y
TGAGGGGCAC GCAGGGCGGG GTCTCATTCT TGCGCTGGGC CCCAAGAGCA GAGAGGATGT
CATGTTTCAA GGGAGGAGGC TCTCTCGTGC TGCCATTGTT AAAATGCCAA TAAAAGGGTA
CCTTCTGCTT TCTGCTTCTC CTTGTCTCTC TTCACTGCCA CTTCCTCCAG GAGGCATGGA
GGGGCTTCAG CACCCCCTGC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss394611525 MGP_WTSI_15_76080207 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs13471298 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss394611525 MGP_WTSI_15_76080207 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:76133977 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Grina glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding) within coordinates
Mir6953 microRNA 6953 1519 bp downstream
Rr504690 regulatory region 504690 210 bp proximal
Tssr131729 transcription start site region 131729 1941 bp downstream
Tssr131730 transcription start site region 131730 1921 bp downstream
Tssr131731 transcription start site region 131731 1854 bp downstream
Tssr131732 transcription start site region 131732 1824 bp downstream
Tssr131733 transcription start site region 131733 1788 bp downstream
Tssr131734 transcription start site region 131734 1759 bp downstream
Tssr131735 transcription start site region 131735 1705 bp downstream
Tssr131736 transcription start site region 131736 1635 bp downstream
Tssr131737 transcription start site region 131737 1479 bp downstream
Tssr131738 transcription start site region 131738 1305 bp downstream
Tssr131739 transcription start site region 131739 1279 bp downstream
Tssr131740 transcription start site region 131740 1214 bp downstream
Tssr131741 transcription start site region 131741 1153 bp downstream
Tssr131742 transcription start site region 131742 965 bp downstream
Tssr131743 transcription start site region 131743 935 bp downstream
Tssr131744 transcription start site region 131744 916 bp downstream
Tssr131745 transcription start site region 131745 789 bp downstream
Tssr131746 transcription start site region 131746 735 bp downstream
Tssr131747 transcription start site region 131747 687 bp downstream
Tssr131748 transcription start site region 131748 511 bp downstream
Tssr131749 transcription start site region 131749 435 bp downstream
Tssr131750 transcription start site region 131750 288 bp downstream
Tssr131751 transcription start site region 131751 217 bp downstream
Tssr134961 transcription start site region 134961 1729 bp upstream
Tssr134962 transcription start site region 134962 1604 bp upstream
Tssr134963 transcription start site region 134963 427 bp upstream
Tssr134964 transcription start site region 134964 396 bp upstream
Tssr134965 transcription start site region 134965 371 bp upstream
Tssr134966 transcription start site region 134966 238 bp upstream
Tssr134967 transcription start site region 134967 124 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory