rs13471350 SNP Detail

Summary

• ID
  rs13471350
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127033028 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGGTC GTGGGCAGTG TTGCCATCTT
  Y
  ACTTACTGCT TCCGTTTTCC ATCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38555599	mCV23888392	ABI	CRAMUS_MOUSE	r	SNP	A	A	G					G		G
ss61335336	NES16943357	PERLEGEN	MM_PANEL2	r	SNP	A		G	A	G	G	G		G	G	A	G		G		A	A	G		A
ss147729440	ENSMUSSNP5788158	ENSEMBL	ENSEMBL_Sanger	r	SNP		A	G							G					G
ss323529114	CHEV_10_126634215	CHEVERUD	SCREENING_POP	r	SNP													G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs13471350					SNP	T	T	C	T	C	C	C	C	C	C	T	C	C	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61335336	NES16943357	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127033028 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi2345	CpG island 2345	1392 bp distal
Dtx3	deltex 3, E3 ubiquitin ligase	1431 bp upstream
F420014N23Rik	RIKEN cDNA F420014N23 gene	within coordinates
Gm57007	predicted gene, 57007	within coordinates
Pip4k2c	phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	within coordinates
Tssr96170	transcription start site region 96170	1861 bp downstream
Tssr99736	transcription start site region 99736	1937 bp upstream
Tssr99737	transcription start site region 99737	1420 bp upstream