rs13471380 SNP Detail

Summary

• ID
  rs13471380
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:4539489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GAGTTCACAC CTTCTTCTCC ATAGTTTGAA TACAACGTAG AAGGGGTGTC
  M
  TCCAAGGAAA TGGCAACTCA GCTCGCCTTC ATGCGCCTGC TAGCCAACCG           
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367230147	MGP_WTSI_6_4489489	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13471380					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367230147	MGP_WTSI_6_4489489	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4539489 () rs orientation: forward

Symbol	Name	Function Class
Col1a2	collagen, type I, alpha 2	within coordinates
Tssr1769	transcription start site region 1769	1509 bp downstream
Tssr1770	transcription start site region 1770	821 bp downstream
Tssr54726	transcription start site region 54726	1691 bp downstream
Tssr54727	transcription start site region 54727	1610 bp downstream
Tssr54728	transcription start site region 54728	1533 bp downstream
Tssr54729	transcription start site region 54729	1479 bp downstream
Tssr54730	transcription start site region 54730	844 bp downstream
Tssr54731	transcription start site region 54731	799 bp downstream
Tssr54732	transcription start site region 54732	712 bp downstream
Tssr54733	transcription start site region 54733	15 bp downstream
Tssr54734	transcription start site region 54734	within coordinates
Tssr54735	transcription start site region 54735	3 bp upstream
Tssr54736	transcription start site region 54736	27 bp upstream
Tssr54737	transcription start site region 54737	49 bp upstream
Tssr54738	transcription start site region 54738	87 bp upstream
Tssr54739	transcription start site region 54739	102 bp upstream
Tssr54740	transcription start site region 54740	166 bp upstream
Tssr54741	transcription start site region 54741	517 bp upstream
Tssr54742	transcription start site region 54742	1039 bp upstream
Tssr54743	transcription start site region 54743	1054 bp upstream
Tssr54744	transcription start site region 54744	1085 bp upstream
Tssr54745	transcription start site region 54745	1097 bp upstream
Tssr54746	transcription start site region 54746	1110 bp upstream
Tssr54747	transcription start site region 54747	1141 bp upstream
Tssr54748	transcription start site region 54748	1185 bp upstream
Tssr54749	transcription start site region 54749	1354 bp upstream
Tssr54750	transcription start site region 54750	1367 bp upstream
Tssr54751	transcription start site region 54751	1375 bp upstream
Tssr54752	transcription start site region 54752	1418 bp upstream
Tssr54753	transcription start site region 54753	1440 bp upstream
Tssr54754	transcription start site region 54754	1549 bp upstream
Tssr54755	transcription start site region 54755	1948 bp upstream
Tssr59718	transcription start site region 59718	1232 bp downstream
Tssr59719	transcription start site region 59719	1300 bp downstream