rs13471414 SNP Detail

Summary

• ID
  rs13471414
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:22035952 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TAGGC TCGGACTGTG GCGGCTCTTC
  M
  AGCTCAAGCT CGGGTTCGGG CCCCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39170028	mCV22932549	ABI	CRAMUS_MOUSE	r	SNP	T	T	G	G	T
ss324567165	CHEV_14_22805106	CHEVERUD	SCREENING_POP	r	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs13471414					SNP	A	A	C	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:22035952 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi6225	CpG island 6225	within coordinates
Cpgi6226	CpG island 6226	1200 bp proximal
Rr488631	regulatory region 488631	1738 bp distal
Rr488632	regulatory region 488632	287 bp proximal
Rr488633	regulatory region 488633	370 bp proximal
Tssr127698	transcription start site region 127698	227 bp upstream
Tssr127699	transcription start site region 127699	1609 bp downstream
Tssr127700	transcription start site region 127700	1672 bp downstream
Tssr127701	transcription start site region 127701	1977 bp downstream
Zfp503	zinc finger protein 503	within coordinates