rs13471443 SNP Detail

Summary

• ID
  rs13471443
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:144369801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCC CTCATGGCGG AGGTGAAGGT
  S
  AAGGTGCAGC CGCCGGACGC GGATC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45235010	mCV22517807	ABI	CRAMUS_MOUSE	f	SNP	G	C	C
ss147798113	ENSMUSSNP6091065	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
ss320536502	CHEV_2_144353617	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs13471443					SNP	G	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144369801 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12356	CpG island 12356	within coordinates
Dzank1	double zinc ribbon and ankyrin repeat domains 1	467 bp upstream
Polr3f	polymerase (RNA) III (DNA directed) polypeptide F	within coordinates
Rr566471	regulatory region 566471	1730 bp distal
Rr566472	regulatory region 566472	494 bp distal
Rr566473	regulatory region 566473	123 bp distal
Rr566474	regulatory region 566474	within coordinates
Tssr20540	transcription start site region 20540	354 bp downstream
Tssr20541	transcription start site region 20541	108 bp downstream
Tssr20542	transcription start site region 20542	79 bp downstream
Tssr26607	transcription start site region 26607	457 bp upstream
Tssr26608	transcription start site region 26608	449 bp upstream
Tssr26609	transcription start site region 26609	431 bp upstream
Tssr26610	transcription start site region 26610	369 bp upstream
Tssr26611	transcription start site region 26611	344 bp upstream