rs13471522 SNP Detail

Summary

• ID
  rs13471522
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30253695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCG CCATGTGTGC AGGTGTCCAC
  R
  GACTCTGGGT ATTTTTCCGT GCTGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46124202	mCV25394713	ABI	CRAMUS_MOUSE	f	SNP		A						G
ss60990785	NES16136665	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	G	G	G	G	G	G	G	G	G	G
ss148682370	ENSMUSSNP7104046	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs13471522					SNP	G	A	A	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60990785	NES16136665	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30253695 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18808	CpG island 18808	1619 bp distal
Cpgi18809	CpG island 18809	736 bp distal
Cpgi18810	CpG island 18810	within coordinates
Hspb6	heat shock protein, alpha-crystallin-related, B6	within coordinates
Lin37	lin-37 DREAM MuvB core complex component	1171 bp downstream
Mir9769	microRNA 9769	1366 bp downstream
Proser3	proline and serine rich 3	1971 bp upstream
Rr400242	regulatory region 400242	1778 bp downstream
Rr644848	regulatory region 644848	1508 bp distal
Rr644849	regulatory region 644849	992 bp distal
Rr644850	regulatory region 644850	769 bp distal
Tssr65779	transcription start site region 65779	1706 bp downstream
Tssr65780	transcription start site region 65780	998 bp downstream
Tssr65781	transcription start site region 65781	961 bp downstream
Tssr65782	transcription start site region 65782	502 bp upstream
Tssr65783	transcription start site region 65783	577 bp upstream
Tssr65784	transcription start site region 65784	601 bp upstream
Tssr65785	transcription start site region 65785	653 bp upstream
Tssr65786	transcription start site region 65786	671 bp upstream
Tssr65787	transcription start site region 65787	765 bp upstream
Tssr71787	transcription start site region 71787	1954 bp upstream
Tssr71788	transcription start site region 71788	1895 bp upstream
Tssr71789	transcription start site region 71789	395 bp downstream
Tssr71790	transcription start site region 71790	507 bp downstream