rs13471535 SNP Detail

Summary

• ID
  rs13471535
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116508585 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                         TAGTTCTGG GAGCCGGGCC CTCGCTCCTC CCTGGGGTGG
  GGCTGCCGCT TCTCCGCCGG ACTTAAGTCG GGCCCTGTTG CCTCAGTACT GGAGTGCAGA
  S
  CTGAATTCGG GCCACTTTGT CTTTTCCACA GCCTGTGCTC ACTGCCAAGG TGAGTTCTTC
  CTGCTGCTGA CTCGTCTTTT TCTCCTGAGT TAAAGGCGAG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45597658	mCV22661959	ABI	CRAMUS_MOUSE	r	SNP	C	G	C	G
ss147279956	ENSMUSSNP3048046	ENSEMBL	ENSEMBL_Sanger	r	SNP	C	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs13471535					SNP	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116508585 () rs orientation: reverse

Symbol	Name	Function Class
Akr1a1	aldo-keto reductase family 1, member A1	within coordinates
Cpgi14637	CpG island 14637	within coordinates
Rr597944	regulatory region 597944	within coordinates
Rr597945	regulatory region 597945	278 bp proximal
Rr597946	regulatory region 597946	282 bp proximal
Tssr38538	transcription start site region 38538	1539 bp downstream
Tssr38539	transcription start site region 38539	120 bp upstream
Tssr42908	transcription start site region 42908	901 bp upstream
Tssr42909	transcription start site region 42909	1 bp downstream
Tssr42910	transcription start site region 42910	31 bp downstream
Tssr42911	transcription start site region 42911	47 bp downstream
Tssr42912	transcription start site region 42912	153 bp downstream
Tssr42913	transcription start site region 42913	178 bp downstream
Tssr42914	transcription start site region 42914	208 bp downstream
Tssr42915	transcription start site region 42915	256 bp downstream
Tssr42916	transcription start site region 42916	289 bp downstream