rs13471608 SNP Detail

Summary

• ID
  rs13471608
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44385404 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

             CACCATATCT GTCCCCGACA AATGTCAGCT GTTTAGTTAT CAGTTCTAGG
  R
  ACATTGAACA CGAAGACTTT TTCCATGAAA AAATCTTCAG TTACCAAAAG           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50801812	NES13525196	PERLEGEN	MM_PANEL2	r	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs13471608					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50801812	NES13525196	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44385404 () rs orientation: reverse

Symbol	Name	Function Class
D19Mit67	DNA segment, Chr 19, Massachusetts Institute of Technology 67	190 bp proximal
D19Mit67.2	DNA segment, Chr 19, Massachusetts Institute of Technology 67.2	40 bp proximal
D19Nds1	DNA segment, Chr 19, Nuffield Department of Surgery 1	148 bp proximal
Rr548237	regulatory region 548237	1547 bp distal
Rr548238	regulatory region 548238	within coordinates
Rr548239	regulatory region 548239	1749 bp proximal
Scd1	stearoyl-Coenzyme A desaturase 1	within coordinates
Tssr5524	transcription start site region 5524	601 bp upstream
Tssr156606	transcription start site region 156606	539 bp downstream
Tssr156607	transcription start site region 156607	218 bp downstream
Tssr156608	transcription start site region 156608	176 bp upstream
Tssr156609	transcription start site region 156609	386 bp upstream
Tssr159452	transcription start site region 159452	1720 bp upstream
Tssr159453	transcription start site region 159453	1651 bp upstream
Tssr159454	transcription start site region 159454	1632 bp upstream
Tssr159455	transcription start site region 159455	1326 bp upstream
Tssr159456	transcription start site region 159456	1207 bp upstream
Tssr159457	transcription start site region 159457	1178 bp upstream
Tssr159458	transcription start site region 159458	1144 bp upstream
Tssr159459	transcription start site region 159459	1052 bp upstream
Tssr159460	transcription start site region 159460	1016 bp upstream
Tssr159461	transcription start site region 159461	955 bp upstream
Tssr159462	transcription start site region 159462	923 bp upstream
Tssr159463	transcription start site region 159463	884 bp upstream
Tssr159464	transcription start site region 159464	854 bp upstream
Tssr159465	transcription start site region 159465	834 bp upstream
Tssr159466	transcription start site region 159466	816 bp upstream
Tssr159467	transcription start site region 159467	752 bp upstream
Tssr159468	transcription start site region 159468	506 bp upstream
Tssr159469	transcription start site region 159469	441 bp upstream
Tssr159470	transcription start site region 159470	427 bp upstream
Tssr159471	transcription start site region 159471	394 bp upstream
Tssr159472	transcription start site region 159472	368 bp upstream
Tssr159473	transcription start site region 159473	349 bp upstream
Tssr159474	transcription start site region 159474	327 bp upstream
Tssr159475	transcription start site region 159475	280 bp upstream
Tssr159476	transcription start site region 159476	262 bp upstream
Tssr159477	transcription start site region 159477	253 bp upstream
Tssr159478	transcription start site region 159478	232 bp upstream
Tssr159479	transcription start site region 159479	214 bp upstream
Tssr159480	transcription start site region 159480	182 bp upstream
Tssr159481	transcription start site region 159481	123 bp upstream
Tssr159482	transcription start site region 159482	35 bp upstream
Tssr159483	transcription start site region 159483	45 bp downstream
Tssr159484	transcription start site region 159484	79 bp downstream
Tssr159485	transcription start site region 159485	205 bp downstream
Tssr159486	transcription start site region 159486	212 bp downstream
Tssr159487	transcription start site region 159487	293 bp downstream
Tssr159488	transcription start site region 159488	310 bp downstream
Tssr159489	transcription start site region 159489	364 bp downstream
Tssr159490	transcription start site region 159490	466 bp downstream
Tssr159491	transcription start site region 159491	501 bp downstream
Tssr159492	transcription start site region 159492	552 bp downstream
Tssr159493	transcription start site region 159493	578 bp downstream
Tssr159494	transcription start site region 159494	598 bp downstream
Tssr159495	transcription start site region 159495	716 bp downstream
Tssr159496	transcription start site region 159496	786 bp downstream
Tssr159497	transcription start site region 159497	799 bp downstream
Tssr159498	transcription start site region 159498	811 bp downstream
Tssr159499	transcription start site region 159499	841 bp downstream
Tssr159500	transcription start site region 159500	872 bp downstream
Tssr159501	transcription start site region 159501	887 bp downstream
Tssr159502	transcription start site region 159502	923 bp downstream
Tssr159503	transcription start site region 159503	936 bp downstream
Tssr159504	transcription start site region 159504	1015 bp downstream
Tssr159505	transcription start site region 159505	1128 bp downstream