rs13471659 SNP Detail

Summary

• ID
  rs13471659
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:141939280 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

             TCCGTGGTCT TAGGCGATGA CTGCATGGAG TACTTGGTGA TGGGGCCTTT
  Y
  AGGATCAGGT CTTCCACAGA GCCGCCCACC TCCGTCATAG TCCGACGGAT           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47350110	NES11533212	PERLEGEN	MM_PANEL2	r	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs13471659					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47350110	NES11533212	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141939280 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi19961	CpG island 19961	1890 bp proximal
Ctsd	cathepsin D	within coordinates
Rr381604	regulatory region 381604	665 bp upstream
Rr658152	regulatory region 658152	860 bp distal
Rr658153	regulatory region 658153	272 bp proximal
Tssr70145	transcription start site region 70145	54 bp downstream
Tssr70146	transcription start site region 70146	33 bp downstream
Tssr70147	transcription start site region 70147	1457 bp upstream
Tssr75787	transcription start site region 75787	within coordinates
Tssr75788	transcription start site region 75788	50 bp downstream
Tssr75789	transcription start site region 75789	73 bp downstream
Tssr75790	transcription start site region 75790	336 bp downstream
Tssr75791	transcription start site region 75791	364 bp downstream
Tssr75792	transcription start site region 75792	385 bp downstream
Tssr75793	transcription start site region 75793	1128 bp downstream
Tssr75794	transcription start site region 75794	1282 bp downstream
Tssr75795	transcription start site region 75795	1306 bp downstream