rs13471660 SNP Detail

Summary

• ID
  rs13471660
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:141934547 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

             CTGCACCTGT TCAGGTAGAA GGAGAAGATG TTCTTGTCCA CCAGCTTCTG
  R
  TGCATCAGGT TGTCAAAGAC CGGAAGCACG TTGTTAACAG AGATATGAGG           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373449981	MGP_WTSI_7_149566715	EVA_MGPV3	EVA_MGPV3	r	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13471660					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373449981	MGP_WTSI_7_149566715	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141934547 () rs orientation: reverse

Symbol	Name	Function Class
Ctsd	cathepsin D	Coding-Synonymous
Gm49369	predicted gene, 49369	Coding-Synonymous
Rr368483	regulatory region 368483	365 bp upstream
Rr658151	regulatory region 658151	445 bp proximal
Tssr70137	transcription start site region 70137	12 bp downstream
Tssr70138	transcription start site region 70138	21 bp upstream
Tssr70139	transcription start site region 70139	40 bp upstream
Tssr70140	transcription start site region 70140	70 bp upstream
Tssr70141	transcription start site region 70141	83 bp upstream
Tssr70142	transcription start site region 70142	119 bp upstream
Tssr70143	transcription start site region 70143	1814 bp upstream
Tssr75774	transcription start site region 75774	1 bp upstream
Tssr75775	transcription start site region 75775	1 bp downstream
Tssr75776	transcription start site region 75776	7 bp downstream
Tssr75777	transcription start site region 75777	40 bp downstream
Tssr75778	transcription start site region 75778	80 bp downstream
Tssr75779	transcription start site region 75779	116 bp downstream
Tssr75780	transcription start site region 75780	126 bp downstream
Tssr75781	transcription start site region 75781	148 bp downstream
Tssr75782	transcription start site region 75782	172 bp downstream
Tssr75783	transcription start site region 75783	1806 bp downstream