rs13471694 SNP Detail

Summary

• ID
  rs13471694
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140843066 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTTCA AACAGCGCAG ATAAATGCAG
  R
  CAAGAAAGGA CGCCGCTGCT GCCAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37786978	NES09130465	PERLEGEN	MM_PANEL2	r	SNP	T		C	C	T	C		C	T	T	T	C	T	C	T	C
ss45668029	mCV23727156	ABI	CRAMUS_MOUSE	r	SNP		T	C				C		T
ss147725850	ENSMUSSNP6744129	ENSEMBL	ENSEMBL_Sanger	r	SNP		T	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs13471694					SNP	A	A	G	G	A	G	G	G	A	A	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786978	NES09130465	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140843066 () rs orientation: reverse

Symbol	Name	Function Class
4921514A10Rik	RIKEN cDNA 4921514A10 gene	within coordinates
Rr603650	regulatory region 603650	690 bp distal
Rr603651	regulatory region 603651	85 bp distal
Szrd1	SUZ RNA binding domain containing 1	within coordinates
Tssr44297	transcription start site region 44297	464 bp upstream
Tssr44298	transcription start site region 44298	362 bp upstream
Tssr44299	transcription start site region 44299	86 bp upstream