rs13471697 SNP Detail

Summary

• ID
  rs13471697
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140841577 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTCCT CTGGCTTGTG CGCTATAGCA
  R
  TGGCCCGTAT CATCTTCCCC TTAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss917114321	MGP_WTSI_4_141114266	EVA_MGPV3	EVA_MGPV3	r	SNP	T	T	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	T	C	T	C	T	T	T	T	C	T	T	C	T	C	C	T	T	T	T	C	T	T	C	T	T	T	C	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13471697					SNP	A	A	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	A	G	A	G	A	A	A	A	G	A	A	G	A	G	G	A	A	A	A	G	A	A	G	A	A	A	G	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917114321	MGP_WTSI_4_141114266	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140841577 () rs orientation: reverse

Symbol	Name	Function Class
4921514A10Rik	RIKEN cDNA 4921514A10 gene	1394 bp upstream
Rr603650	regulatory region 603650	within coordinates
Rr603651	regulatory region 603651	1164 bp proximal
Spata21	spermatogenesis associated 21	1506 bp downstream
Szrd1	SUZ RNA binding domain containing 1	within coordinates
Tssr44296	transcription start site region 44296	580 bp upstream
Tssr44297	transcription start site region 44297	1007 bp downstream
Tssr44298	transcription start site region 44298	1074 bp downstream
Tssr44299	transcription start site region 44299	1383 bp downstream