rs13471888 SNP Detail

Summary

• ID
  rs13471888
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115535345 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTTTT TAACTCTTGT CTTCTGTGAG
  Y
  TTTCCGTCCT CTGTAGTCAC GTGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss38851569	mCV25285550	ABI	CRAMUS_MOUSE	r	SNP	G	G	A
ss132877604	ENSMUSSNP1930795	ENSEMBL	ENSEMBL_Sanger	r	SNP		G	A
ss323863492	CHEV_11_115505833	CHEVERUD	SCREENING_POP	r	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs13471888					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115535345 () rs orientation: reverse

Symbol	Name	Function Class
Grb2	growth factor receptor bound protein 2	within coordinates
Rr459978	regulatory region 459978	1739 bp distal
Rr459979	regulatory region 459979	651 bp distal
Rr459980	regulatory region 459980	1807 bp proximal
Tssr111788	transcription start site region 111788	541 bp downstream
Tssr111789	transcription start site region 111789	696 bp downstream