rs13471891 SNP Detail

Summary

• ID
  rs13471891
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:115536733 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

             GAGTTATCCA TGACATGAAT GAAGTCTCCT CTGCGAAAGC CCAGCTCGCC
  Y
  TCCTCCTGGG GGTCAAAGTC AAAGAGCGCC TGGACGTAGG TTGGCTGCTG           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132877608	ENSMUSSNP6310647	ENSEMBL	ENSEMBL_Sanger	r	SNP	A	G	A
ss323863494	CHEV_11_115507221	CHEVERUD	SCREENING_POP	r	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs13471891					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115536733 () rs orientation: reverse

Symbol	Name	Function Class
Grb2	growth factor receptor bound protein 2	Coding-Synonymous
Rr459980	regulatory region 459980	419 bp proximal
Rr459981	regulatory region 459981	1579 bp proximal
Rr459982	regulatory region 459982	1727 bp proximal
Tssr111788	transcription start site region 111788	842 bp upstream
Tssr111789	transcription start site region 111789	668 bp upstream