rs13472109 SNP Detail

Summary

• ID
  rs13472109
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165064424 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTGCC GCAGGCGCTT GCTCCGAGTA
  R
  CCCTGCGGCT CCGCTTCTGC CATGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45016593	mCV24497819	ABI	CRAMUS_MOUSE	r	SNP	T	T	T	T	C
ss145997553	ENSMUSSNP1358748	ENSEMBL	ENSEMBL_Sanger	r	SNP		T	T		C
ss320086589	CHEV_1_167166986	CHEVERUD	SCREENING_POP	r	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs13472109					SNP	A	A	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165064424 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi949	CpG island 949	within coordinates
Gm38190	predicted gene, 38190	1730 bp upstream
Rr372385	regulatory region 372385	within coordinates
Rr422343	regulatory region 422343	within coordinates
Rr422344	regulatory region 422344	313 bp distal
Rr422345	regulatory region 422345	78 bp proximal
Rr422346	regulatory region 422346	84 bp proximal
Tiprl	TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	within coordinates
Tssr9804	transcription start site region 9804	348 bp downstream
Tssr14765	transcription start site region 14765	37 bp downstream
Tssr14766	transcription start site region 14766	125 bp downstream