rs13472323 SNP Detail

Summary

• ID
  rs13472323
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88191468 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

             CTGACATAGA AAGAAACAGA AAATGAAGCC ATTTAGTGTT TAATGTGGCT
  S
  AAGATGGAAC TAGAGAAGGC ATCTGGTAAA GGCCCTAAGG ATAGGCTAGT           
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49621004	NES12947111	PERLEGEN	MM_PANEL2	r	SNP	G	C	G	C	G	C	C	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs13472323					SNP	C	G	C	G	C	G	G	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49621004	NES12947111	PERLEGEN	MM_PANEL	r	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88191468 () rs orientation: reverse

Symbol	Name	Function Class
Hjurp	Holliday junction recognition protein	within coordinates
Mroh2a	maestro heat-like repeat family member 2A	1457 bp downstream
Rr18062	regulatory region 18062	1668 bp distal
Rr35066	regulatory region 35066	within coordinates
Tssr12870	transcription start site region 12870	1072 bp downstream