rs13472326 SNP Detail

Summary

• ID
  rs13472326
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88191320 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      T CAGCTATAAA TTACTTGGAG AGGGGACCAG GTCTCTACAT
  TCAGTGACAA CATGAAGGAT ATTAGGAGCT AGTTCTTCCT CCTTTGTGCT AGACCAGTAA
  G
  GCTTTTATAT ACCTTGCTCT ATCTAGCTAA GGACCCTTTG GTGATGTGGG CAGTCTCTCT
  TAGGAAGACA GTTTGTGTCT GCTGACTCCT CTAAGTTCAC T                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss144899192	ENSMUSSNP7089004	ENSEMBL	ENSEMBL_Sanger	r	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs13472326					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88191320 () rs orientation: reverse

Symbol	Name	Function Class
Hjurp	Holliday junction recognition protein	within coordinates
Mroh2a	maestro heat-like repeat family member 2A	1309 bp downstream
Rr18062	regulatory region 18062	1520 bp distal
Rr35066	regulatory region 35066	within coordinates
Tssr12870	transcription start site region 12870	1220 bp downstream