rs13472370 SNP Detail

Summary

• ID
  rs13472370
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69807092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGA CTCCTGGCTT CCCCCCAGCT
  Y
  CCCGTACAGA TACAAGCAGC AGGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38685579	mCV23933446	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	C
ss132362934	ENSMUSSNP2018133	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		C
ss323732167	CHEV_11_69729768	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs13472370					SNP	C	C	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69807092 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3157	CpG island 3157	1557 bp distal
Eif5a	eukaryotic translation initiation factor 5A	448 bp downstream
Gm72765	predicted gene, 72765	446 bp upstream
Gps2	G protein pathway suppressor 2	within coordinates
Rr235842	regulatory region 235842	92 bp distal
Rr247070	regulatory region 247070	within coordinates
Rr247071	regulatory region 247071	1708 bp proximal
Tssr102555	transcription start site region 102555	2000 bp downstream
Tssr102556	transcription start site region 102556	1969 bp downstream
Tssr102557	transcription start site region 102557	211 bp downstream
Tssr102558	transcription start site region 102558	1034 bp upstream
Tssr108878	transcription start site region 108878	709 bp downstream
Tssr108879	transcription start site region 108879	976 bp downstream
Tssr108880	transcription start site region 108880	1433 bp downstream