rs13472401 SNP Detail

Summary

• ID
  rs13472401
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60193740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCACGCTT TCTCATCTGG
  AGGGCAGCGA GGAGTGCCGC TCACTCAGGC AGGTGACAGG GGTGCTCTTC TCTCTGAACA
  GGTCTGGTAG CAGCCTTCAA GGTCACCACT CCATATTCTC TCTATGTGTG TCCCGAGGGA
  CAGAATGCCA CCCTCACCTG CAGGATTCTG GGCCCCGTGT CCAAAGGGCA CGATGTGACC
  R
  TCTACAAGAC GTGGTACCTC AGCTCACGAG GCGAGGTCCA GATGTGCAAA GAACACCGGC
  CCATACGCAA CTTCACATTG CAGCACCTTC AGCACCACGG AAGCCACCTG AAAGCCAACG
  CCAGCCATGA CCAGCCCCAG AAGCATGGGC TAGAGCTAGC TTCTGACCAC CACGGTAACT
  TCTCTATCAC CCTGCGCAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	KK/HlJ
ss50866536	NES14171032	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	KK/HlJ
rs13472401					SNP	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50866536	NES14171032	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60193740 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Tssr93621	transcription start site region 93621	23 bp upstream
Tssr93622	transcription start site region 93622	135 bp upstream
Tssr93623	transcription start site region 93623	521 bp upstream
Tssr97721	transcription start site region 97721	86 bp downstream
Tssr97722	transcription start site region 97722	253 bp downstream
Tssr97723	transcription start site region 97723	288 bp downstream
Vsir	V-set immunoregulatory receptor	within coordinates