rs13472413 SNP Detail

Summary

• ID
  rs13472413
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24692794 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGTAT CCTCCCCTTC CAACCCCACT
  R
  CTTCCTTCCC AGCCAGTATC TGATA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss39495333	mCV24345999	ABI	CRAMUS_MOUSE	r	SNP	T	T	C	T
ss145356438	ENSMUSSNP6078752	ENSEMBL	ENSEMBL_Sanger	r	SNP		T		T
ss325331947	CHEV_17_24610765	CHEVERUD	SCREENING_POP	r	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs13472413					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24692794 () rs orientation: reverse

Symbol	Name	Function Class
Bricd5	BRICHOS domain containing 5	64 bp upstream
Mlst8	MTOR associated protein, LST8 homolog (S. cerevisiae)	within coordinates
Pgp	phosphoglycolate phosphatase	710 bp downstream
Rr523320	regulatory region 523320	1427 bp distal
Rr523321	regulatory region 523321	within coordinates
Tssr143037	transcription start site region 143037	75 bp upstream