rs13472414 SNP Detail

Summary

• ID
  rs13472414
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24694806 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTTCA ATGACAGTGT GCTGGGTTAG
  M
  CTTGGCCCTT GAGGCTGCAT TGGGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss39490215	mCV24346002	ABI	CRAMUS_MOUSE	r	SNP	T	G
ss145356454	ENSMUSSNP54762	ENSEMBL	ENSEMBL_Sanger	r	SNP		G
ss325331952	CHEV_17_24612777	CHEVERUD	SCREENING_POP	r	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs13472414					SNP	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24694806 () rs orientation: reverse

Symbol	Name	Function Class
Bricd5	BRICHOS domain containing 5	363 bp downstream
Mlst8	MTOR associated protein, LST8 homolog (S. cerevisiae)	within coordinates
Rr523321	regulatory region 523321	1855 bp distal
Tssr143037	transcription start site region 143037	1910 bp downstream
Tssr146736	transcription start site region 146736	1759 bp downstream
Tssr146737	transcription start site region 146737	1779 bp downstream