rs13472434 SNP Detail

Summary

• ID
  rs13472434
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:70886255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGCG GGGTCCCGCG TCAGCCTTCC
  Y
  TTGAGGTTCG CAGGTGGCGG CTGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38125068	NES09278503	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	T	C	C	T	C	C		C	C	C	C		T
ss45273139	mCV24280984	ABI	CRAMUS_MOUSE	f	SNP		T	C
ss320335134	CHEV_2_70893968	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs13472434					SNP	T	T	C	C	T	T	C	C	T	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38125068	NES09278503	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70886255 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11734	CpG island 11734			within coordinates
Dcaf17	DDB1 and CUL4 associated factor 17			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Mettl8	methyltransferase 8, methylcytidine			mRNA-UTR
				Noncoding-Transcript-Variant
Rr397032	regulatory region 397032			97 bp downstream
Rr558662	regulatory region 558662			350 bp distal
Rr558663	regulatory region 558663			49 bp distal
Rr558664	regulatory region 558664			153 bp distal
Rr558665	regulatory region 558665			353 bp proximal
Tssr18237	transcription start site region 18237			95 bp downstream
Tssr24467	transcription start site region 24467			398 bp upstream
Tssr24468	transcription start site region 24468			382 bp upstream
Tssr24469	transcription start site region 24469			300 bp upstream