rs13472621 SNP Detail

Summary

• ID
  rs13472621
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130552845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAC TCTATGTGTA AGGTTGATTC
  Y
  CCTTGATTGC CAGAGGCATG TGGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37753324	NES09165120	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T		T	C	C		C	T	T	C		C
ss45724976	mCV24233929	ABI	CRAMUS_MOUSE	f	SNP	C	T					T	T
ss147462502	ENSMUSSNP6733083	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T
ss321318877	CHEV_4_130381449	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs13472621					SNP	C	T	T	T	C	T	T	T	C	C	C	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37753324	NES09165120	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130552845 () rs orientation: forward

Symbol	Name	Function Class
Gm26716	predicted gene, 26716	within coordinates
Sdc3	syndecan 3	within coordinates
Tssr39289	transcription start site region 39289	1889 bp downstream
Tssr39290	transcription start site region 39290	1882 bp downstream
Tssr39291	transcription start site region 39291	1736 bp downstream
Tssr39292	transcription start site region 39292	1653 bp downstream
Tssr39293	transcription start site region 39293	332 bp upstream
Tssr39294	transcription start site region 39294	487 bp upstream
Tssr39295	transcription start site region 39295	653 bp upstream
Tssr39296	transcription start site region 39296	679 bp upstream