rs13472806 SNP Detail

Summary

• ID
  rs13472806
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:8929098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATAC AAATCTTCAT TCCTTTTGGT
  M
  TCAAAGGGAG TAAGGAGTGA GGGAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss50609148	NES13644109	PERLEGEN	MM_PANEL2	f	SNP	A		C	A	C	A	C	A		A	C		A	A	A	A
ss146030819	ENSMUSSNP4253149	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C						A
ss325718260	CHEV_19_9026224	CHEVERUD	SCREENING_POP	f	SNP												C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs13472806					SNP	A	A	C	A	C	A	C	A	A	A	C	C	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50609148	NES13644109	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:8929098 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10588	CpG island 10588	1726 bp proximal
Gm59132	predicted gene, 59132	within coordinates
Mta2	metastasis-associated gene family, member 2	within coordinates
Rr359578	regulatory region 359578	98 bp distal
Rr363780	regulatory region 363780	702 bp proximal
Rr405849	regulatory region 405849	1832 bp upstream
Tssr154900	transcription start site region 154900	336 bp upstream