rs13472821 SNP Detail

Summary

• ID
  rs13472821
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124716525 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CAGCT GTGGCTGCCA TCCAGACTTT
  R
  TTGGAATTCT TGAAGAGAGA TAAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51196599	NES13821409	PERLEGEN	MM_PANEL2	r	SNP	T		T	C	T	C	C	C	C	C	C		C	C	C	C		T
ss149203467	ENSMUSSNP3538784	ENSEMBL	ENSEMBL_Sanger	r	SNP		T	T						C
ss321672958	CHEV_5_125028471	CHEVERUD	SCREENING_POP	r	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs13472821					SNP	A	A	A	G	A	G	G	G	G	G	G	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51196599	NES13821409	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124716525 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi16619	CpG island 16619	222 bp proximal
Eif2b1	eukaryotic translation initiation factor 2B, subunit alpha	within coordinates
Gtf2h3	general transcription factor IIH, polypeptide 3	686 bp upstream
Rr399368	regulatory region 399368	514 bp upstream
Rr620506	regulatory region 620506	191 bp proximal
Rr620507	regulatory region 620507	659 bp proximal
Rr620508	regulatory region 620508	689 bp proximal
Tssr48907	transcription start site region 48907	653 bp upstream
Tssr48908	transcription start site region 48908	672 bp upstream
Tssr53375	transcription start site region 53375	561 bp downstream
Tssr53376	transcription start site region 53376	583 bp downstream
Tssr53377	transcription start site region 53377	621 bp downstream