rs13472841 SNP Detail

Summary

• ID
  rs13472841
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107970827 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CCTGC GGGCAACAGT GTGGAAACCC
  S
  GGGGGAGTAA GTGTGACAGG AGCAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24740649	apeh_AP48_7	ROCHEBIO	RPAMM	r	SNP	C	G	G	C	C	G	G	G	G	C			G	G	C	C	G	C	C	G	C	G	C
ss24740767	apeh_AP61_2	ROCHEBIO	RPAMM	r	SNP	C	G	G	C	C	G	G	G	G	C	C	C	G	G	C	C	G	C	C	G	C	G	C
ss46349736	mCV22696215	ABI	CRAMUS_MOUSE	r	SNP			G							C		C
ss136951677	ENSMUSSNP206773	ENSEMBL	ENSEMBL_Sanger	r	SNP			G									C
ss323192588	CHEV_9_107995959	CHEVERUD	SCREENING_POP	r	SNP														G								G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs13472841					SNP	G	C	C	G	G	C	C	C	C	G	G	G	C	C	G	G	C	G	G	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107970827 () rs orientation: reverse

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	within coordinates
Cpgi22322	CpG island 22322	452 bp proximal
Gm57046	predicted gene, 57046	1027 bp upstream
Rr401675	regulatory region 401675	793 bp upstream
Rr686707	regulatory region 686707	647 bp proximal
Rr686708	regulatory region 686708	944 bp proximal
Rr686709	regulatory region 686709	968 bp proximal
Tssr87065	transcription start site region 87065	1029 bp upstream
Tssr87066	transcription start site region 87066	1564 bp upstream
Tssr87067	transcription start site region 87067	1609 bp upstream
Tssr91491	transcription start site region 91491	831 bp downstream
Tssr91492	transcription start site region 91492	899 bp downstream