rs13472885 SNP Detail

Summary

• ID
  rs13472885
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:145066277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAG CTCAGCACTG CTCCAGTCTG
  M
  TGTAGGTTCA GGACTGGCCC TCAGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss45795942	mCV25297283	ABI	CRAMUS_MOUSE	f	SNP		A	C					C		C
ss51533901	NES14867240	PERLEGEN	MM_PANEL2	f	SNP	A		C	A	C	A	C		C	C	C	A		C	C	A	C
ss144624850	ENSMUSSNP4343370	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C							C
ss321712389	CHEV_5_145890336	CHEVERUD	SCREENING_POP	f	SNP													A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs13472885					SNP	A	A	C	A	C	A	C	C	C	C	C	A	A	C	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51533901	NES14867240	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:145066277 () rs orientation: forward

Symbol	Name	Function Class
Arpc1b	actin related protein 2/3 complex, subunit 1B	1281 bp downstream
Pdap1	PDGFA associated protein 1	within coordinates
Tssr49735	transcription start site region 49735	1552 bp downstream
Tssr49736	transcription start site region 49736	1529 bp downstream
Tssr49737	transcription start site region 49737	1468 bp downstream
Tssr49738	transcription start site region 49738	1460 bp downstream
Tssr49739	transcription start site region 49739	1433 bp downstream
Tssr49740	transcription start site region 49740	1350 bp downstream
Tssr49741	transcription start site region 49741	1977 bp upstream
Tssr54417	transcription start site region 54417	1408 bp upstream
Tssr54418	transcription start site region 54418	1311 bp upstream