rs13473015 SNP Detail

Summary

• ID
  rs13473015
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114960722 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGGAC AGGTTGCACA AGGAGCTGCA
  R
  ATACAGATCC AGAAGCTTAA TCGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45753552	mCV25201636	ABI	CRAMUS_MOUSE	r	SNP	C	C	T
ss149117396	ENSMUSSNP2791291	ENSEMBL	ENSEMBL_Sanger	r	SNP	C	C
ss321653558	CHEV_5_115272670	CHEVERUD	SCREENING_POP	r	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs13473015					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114960722 () rs orientation: reverse

Symbol	Name	Function Class
2610524H06Rik	RIKEN cDNA 2610524H06 gene	within coordinates
Cpgi16338	CpG island 16338	582 bp proximal
Gm46920	predicted gene, 46920	1069 bp upstream
Gm57857	predicted gene, 57857	within coordinates
Gm72061	predicted gene, 72061	869 bp upstream
Gm72071	predicted gene, 72071	1097 bp downstream
Gm72099	predicted gene, 72099	within coordinates
Rr378493	regulatory region 378493	within coordinates
Tssr52734	transcription start site region 52734	779 bp downstream
Tssr52735	transcription start site region 52735	800 bp downstream
Tssr52736	transcription start site region 52736	817 bp downstream