rs13473130 SNP Detail

Summary

• ID
  rs13473130
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30737356 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTCCC CTCCTTTCCT TCCACCAAAG
  Y
  AGAAGCCACA GGAAGCCAGA CAGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46056114	mCV22838199	ABI	CRAMUS_MOUSE	r	SNP	A	A	G						A
ss60989527	NES16136128	PERLEGEN	MM_PANEL2	r	SNP	A		G	G	G	G	G	A	A	G	G		G	A	A		G
ss322138603	CHEV_7_31822950	CHEVERUD	SCREENING_POP	r	SNP												A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs13473130					SNP	T	T	C	C	C	C	C	T	T	C	C	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60989527	NES16136128	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30737356 () rs orientation: reverse

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	within coordinates
Gm38984	predicted gene, 38984	within coordinates
Gm71772	predicted gene, 71772	618 bp downstream
Tssr65831	transcription start site region 65831	923 bp downstream
Tssr65832	transcription start site region 65832	514 bp downstream
Tssr65833	transcription start site region 65833	75 bp downstream
Tssr65834	transcription start site region 65834	44 bp downstream
Tssr71891	transcription start site region 71891	1432 bp upstream
Tssr71892	transcription start site region 71892	837 bp upstream
Tssr71893	transcription start site region 71893	64 bp upstream
Tssr71894	transcription start site region 71894	41 bp upstream
Tssr71895	transcription start site region 71895	12 bp upstream
Tssr71896	transcription start site region 71896	within coordinates
Tssr71897	transcription start site region 71897	1128 bp downstream